CoPub: a literature-based keyword enrichment tool for microarray data analysis

CoPub: a literature-based keyword enrichment tool for microarray data analysis

Medline is a rich information source, from which links between genes and keywords describing biological processes, pathways, drugs, pathologies and diseases can be extracted. We developed a publicly available tool called CoPub that uses the information in the Medline database for the biological interpretation of microarray data. CoPub allows batch input of multiple human, mouse or rat genes and...

Extracellular exosomes and preeclampsia: a microarray-based study and functional enrichment analysis

Background:  Preeclampsia (PE) is a heterogeneous pregnancy disease which the exact pathophysiology of it is unknown. Recently exosomes have been indicated as a causative factor in the pathogenesis of PE. The aim of the study was to investigate in microarray library data to extract the differentially expressed genes (DEGs) in PE and to perform a functional enrichment analysis to predict the rol...

SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis

MIDAW: a web tool for statistical analysis of microarray data

MIDAW (microarray data analysis web tool) is a web interface integrating a series of statistical algorithms that can be used for processing and interpretation of microarray data. MIDAW consists of two main sections: data normalization and data analysis. In the normalization phase the simultaneous processing of several experiments with background correction, global and local mean and variance no...

MAGIC Tool: integrated microarray data analysis

SUMMARY Several programs are now available for analyzing the large datasets arising from cDNA microarray experiments. Most programs are expensive commercial packages or require expensive third party software. Some are freely available to academic researchers, but are limited to one operating system. MicroArray Genome Imaging and Clustering Tool (MAGIC Tool) is an open source program that works ...